PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000591.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 895aa    MW: 101045 Da    PI: 6.8351
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000591.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.27.2e-1574148189
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              k+Y++YA++ GFs+ + + ++ k +g i++ +f Cs+e +++++ ++              C+a l+++++++++w vtk++++Hn
  Itr_sc000591.1_g00013.1  74 KYYDAYARHGGFSTHVGQYSRAKPDGPIISWDFSCSREVFKRKNVES--------------CNAVLRIERKNTENWIVTKFVEDHN 145
                              69***************************************999877..............************************* PP

                     FAR1  87 Hel 89 
                              H++
  Itr_sc000591.1_g00013.1 146 HSV 148
                              *86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-1274148IPR004330FAR1 DNA binding domain
PfamPF105513.7E-29313405IPR018289MULE transposase domain
PROSITE profilePS5096611.041590626IPR007527Zinc finger, SWIM-type
PfamPF044344.9E-10599624IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8601628IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MDGEVIGVKG NQRPKDGEAN IERKKDGKRN RETHAEHKDG KQNLLGYSTA EESSNEVEKP  60
FVGMVFESEE AARKYYDAYA RHGGFSTHVG QYSRAKPDGP IISWDFSCSR EVFKRKNVES  120
CNAVLRIERK NTENWIVTKF VEDHNHSVAG PSKVHYLRPR RHFAGASKNV VEIPDSQADA  180
MVSMDGNHVS CNTNQGVHNA VSTKGVPIAM ATNQCAQIAA NTNQVLQNAF SLEPNHITRT  240
ISPVTPVNFI QPCSRRRALG RYAQNLLDYF KKMQAENPGF YYAIQLDEDN RMTNVFWADA  300
RSRVAYSHFG DAVIFDTMYR PNQFQVPVAP FTGVNHHGQV VSFGCALLFD ESESSFTWLF  360
QTWLSAMNNC APVSITTDQD RAIKAAINQV LPGTRHCICK WHILREGQER LTHVYMAYPS  420
FHGELYSCIN YSETIEDFES SWTSLLDKFD VHNNEWLQAV YNARQQWAPV YFRDTFFAVL  480
SSKHGVSSFF DGYVNQQTTL PDFFKQYERA LENSLEREIE ADFDTICTAP MLKTPSPMEQ  540
QAANLYTRKV FTKFQEELVE TFVYTANKID GDEVLSKFRV AKYEHDDKAF IVELNFAETK  600
ASCSCQMFEY SGILCRHILT VFTVTNVLTV PSHYILKRWT RNAKSILGSD EQDAVAHAID  660
SLTSRFNNLC QDALKYAEEG AVAVETYDAA SSALREGSRK IAIMKKHVAK VRPPTALASG  720
NLNDDSNKKT PSTTSDTGWP WQDAMPYNIN LNDVGVPIGD LNQPTMTSVA INRDASFADN  780
TVVYTCFKSM TWMIESKNPA NKVAVINLKL QDYGKSPAGE TEVQFRLTRV TLEPMLKSMA  840
YINQQLSMPA NRVAVINLKL QDTKTTSGET EVKFQVSRDA LGSMLRSMAY IHEQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487811.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016487810.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016487809.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016487808.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016487807.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016487806.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLF6HIV90.0F6HIV9_VITVI; Putative uncharacterized protein
STRINGVIT_13s0047g00330.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3